Rick, do you have any of your handeling gear topside?? it was stowed underneath the deck on the Starboard side if I remember correctly and it constists of basicly a large A frame and boom that goes over the side to pick the weapon up out of the water and block and tackle was used in conjuction with it. You need to take a look at this link if you haven't done so already, it walks you through the torpedo tube interlocking mechanism and how to set it up so that you can open the muzzle and the breech door at the same time.
http://www.hnsa.org/doc/fleetsub/tubes/chap4.htm#4AIF you haven't done so by now START greasing the tubes and the interlocks along with the hull zerk fittings for the shutter doors and muzzle doors and when you start to open your shutter/muzzle doors make sure that you do that slow and continue to grease them the whole time and move them back and forth little by little until they are both all the way open and then block the ram(s) so that they will not start to shut while you have people cleaning out the shutter door area and when you start to load your weapons.
How high can the fork lift get as far as tube wise??? because I am looking on the batfish virtual tour and it appears that tubes 3,5,6 have water in them at least in this pic. The reason that I know that is the sight glasses are red and they aren't supposed to be unless there is water in them and if that is just discoleration that is an easy fix to take the lens covers off after the tubes have been verified empty and soak them in warm soapy water and then clean them up and put them back on. The other problem with having water set in the tubes for a number of years is the barnacles and growth that happens inside of the tubes. while I am using the term barnacles they really aren't but they are a pain in the butt to clean out and then preserve taking care not to damage the tubes or the breech door which is bronze.
The after torpedo room tubes look to be dry (again from the virtual tour) but I don't see any skids in the aft room? while that isn't a problem just means that it will be sticking out of the tube and onto the mine table, again I would use an upper tube for that for two reasons. 1. easier on the backs when pulling the weapon in and 2. IF the area floods you won't have to worry too much about water coming into the people tank if the muzzle door doesn't get sealed all the way back up.
Remember the after tubes are longer then the forward room tubes by a couple of feet so take that into consideration when figuring out how much block and tackle you are going to be needing.