My uncle designed and oversaw the construction of the replica of the Nina, which is birthed in Corpus Christie, TX. They built it in Bahia, Brazil, because a lot of the wood in the rain forest was similar in durability as what was used in Europe for wooden ships back then. The villagers also used a lot of the same construction techniques from the 15th century and he was going for authenticity. I don't remember what they used for the deck, but it may have been Ipe. Very hard and durable.
I got to sail on her for 2 weeks in the summer of 1992. We mostly visited ports, but it was a huge attraction where ever it went.